Sequence alignments of alpha and beta spectrin
| dc.contributor.author | Wäschenbach, Lucas | |
| dc.contributor.author | Gohlke, Holger | |
| dc.date.accessioned | 2020-10-20T18:00:08Z | |
| dc.date.available | 2020-10-20T18:00:08Z | |
| dc.date.issued | 2020 | |
| dc.description.abstract | *** Multiple sequence alignment of erythrocytic α-spectrin sequences from 58 different species Sequences of erythrocytic α-spectrin were collected from the UniProtKB database at uniprot.org. 58 sequences with “erythrocytic α-spectrin” annotation were selected with an additional criterium being a comparable sequence length to human erythrocytic α-spectrin (2,419 residues). Multiple sequence alignment was performed with Clustal Omega (webserver version accessed at https://www.ebi.ac.uk/Tools/msa/clustalo/ on 04.30.2020) with default parameters. The result is given in the file with the ending .clustal_num. In addition, the sequence alignment is displayed as a .tif file, with colored residues indicating high identiy according to the ‘identity’ coloring option of Mview; colors vary according to physicochemical properties as specified in the MView documentation (Madeira, Park et al. 2019). *** Multiple sequence alignment of erythrocytic β-spectrin sequences from 11 different species Sequences of erythrocytic β-spectrin were collected from the UniProtKB database at uniprot.org. 11 sequences with “erythrocytic β -spectrin” annotation were selected with an additional criterium being a comparable sequence length to human erythrocytic β-spectrin (2,137 residues). Multiple sequence alignment was performed with Clustal Omega (webserver version accessed at https://www.ebi.ac.uk/Tools/msa/clustalo/ on 04.30.2020) with default parameters. The result is given in the file with the ending .clustal_num. In addition, the sequence alignment is displayed as a .tif file, with colored residues indicating high identiy according to the ‘identity’ coloring option of Mview; colors vary according to physicochemical properties as specified in the MView documentation (Madeira, Park et al. 2019). *** Madeira, F., Park, Y. M., Lee, J., Buso, N., Gur, T., Madhusoodanan, N., Basutkar, P., Tivey, A. R. N., Potter, S. C., Finn, R. D., and Lopez, R. (2019) The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Res. 47, W636-W641 | en |
| dc.identifier.uri | https://researchdata.hhu.de/handle/entry/82 | |
| dc.identifier.uri | http://dx.doi.org/10.25838/d5p-13 | |
| dc.language.iso | en | en |
| dc.publisher | N/A | en |
| dc.rights | Attribution-NonCommercial-NoDerivs 3.0 United States | * |
| dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/3.0/us/ | * |
| dc.subject | spectrin | en |
| dc.subject | sequence alignment | en |
| dc.title | Sequence alignments of alpha and beta spectrin | en |
| dc.type | Dataset | en |
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- spectrin_beta_msa.tif
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- Beta-spectrin sequence alignment
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- spectrin_alpha_msa.tif
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- Alpha-spectrin sequence alignment
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